3406 days ago
3403 days ago
Five unique traits of effective computational biologist
...solution. Learn to perform root cause analysis, learn enough about the underlying system to look for other clues and solutions, and learn to take a long distance view of an issue bef...3949 days ago
Tools to detect synteny blocks regions among multiple genomes
...dless of whether it encompasses multiple genes, an area containing single genes, or areas devoid of known genes to be considers as synteny block as long as there is conservation at t...2609 days ago
Bioinformatics software for biologists in the genomics era
...s between the user-friendly software needed and the scripting/programming infrastructure often employed for the analysis of large numbers of genes, long genomic segments and groups o...3786 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotat...3573 days ago
Bioinformatics definitions and applications !!!
There have been long discussion amongst several specialized/expert educator regarding bioinformatics arena, but everyone explain bioinformatics with their own view. I tried to explain it with a cartoon. Hope you all will like it.3887 days ago
2150 days ago
Bio++ : C Language libraries for your biological need
...me has been change, the biological programmers are ready to use the C++ libraries of biology. These library are designed in order to reduce the C++ long codes in a small and handy fo...3947 days ago
Monitor running jobs on Linux server
...come in handy when you need to find out if things are still running, how long they’ve been running, o...average: 0.00, 0.00, 0.00The first line tells you the current time, how long the machine has been up, how...3620 days ago
Phylogenetic for Bioinformatics
...evolutionary connections between organisms are represented graphically through phylogenetic trees. Due to the fact that evolution takes place over long periods of time that cannot b...3945 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3778 days ago
Prime Minister’s 100k Genome Project
...the next five year in England. A landmark project by british government. Genomics England will play a key role in building on the UK’s long track record as leader in med...3922 days ago
Illumina reveals first dataset of long reads
...lo technology , acquired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length i...data. You can also check following pages for publications on long reads and more: http://www.i...3907 days ago
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
...rds). Topics of current projects based on these data include the origins and/or evolution of protein-coding genes, alternative splicing, microRNAs, long noncoding RNAs, and dosage co...3918 days ago
Research Fellow @ Mendel laboratory
...lent microarray platforms, etc) as well as a dedicated high performance computing facility, a non-conventional workstation of GPUs and a short- and long-term storage disk. Applica...3812 days ago
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3873 days ago
Bioinformatics -- Understanding of living systems through information science
...s, which are conserved between species. If the genome is considered as a long text, then anchors can be tho...The Sakakibara Lab uses a next-generation sequencer at Keio University, along with a cluster machine with h...3916 days ago
Genome + Epigenome = New Understanding of the Pathogens in Your Food
...Weimer describes foodborne pathogens and their proclivity for rapid genome rearrangement. The 100K Pathogen Genome Project he leads is using PacBio long-read sequencing to close geno...3872 days ago
2143 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...ard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::...s => 0, maxRetries => 5, help => undef ); Getopt::Long::Configure('bundling'); GetO...2915 days ago
How long have you been a bioinformatics scientist for?
Most of the researcher have been a scientist whole life, but infact they actually started paying it with at certain time.So, how long have you been in bioinformatics domain now?3238 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...tics tools. What you always miss in bioinformatics when you will no longer working in this field?...ods that offer an alternative solution to various biological problems. A long with these updates, developer...2361 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.htmlFeatures Mapping position agnostic to alignment parameters. Consistently very high sensitivity and precision ...Tags: GraphMap, sensitive, accurate, mapper, long, error-prone, reads
2523 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. I...Tags: Ultrafast, de novo, assembly, long, noisy, reads, consensus
2350 days ago
Comment on "China’s BGI says it can sequence a genome for just $100"
good news after long time. Illumina monoploy will end soon.1526 days ago
Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
Basic commands for genome assembly https://raw.githubusercontent.com/rrwick/Long-read-assembler-comparison/master/supplementary_figures/Fig_S04_commands.png1548 days ago