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Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...n writing one-liners. File System ls — list items in current directory ls -l — list items in current directory and show in long format to see perimissions, s...2274 days ago
Some useful Bioinformatics links
...ps://nanoporetech.com/taxonomy/term/131 De novo long-read assembly of a complex an...lish Generade-nl/TULIP: TULIP - The Uncorrected Long read Itegration Pipeline htt...quences https://github.com/lh3/minimap2 SSPACE-LongRead: scaffolding bacterial dr...2235 days ago
Installing Bio::SCF perl module
...... 2checking for int... yeschecking size of int... 4checking for long... yeschecking size of long... 8checking for inline... in...rgument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] sprint...2212 days ago
LINKS scaffolder bloomfilter setting !
...fold (Multi-FASTA format, required) -s file-of-filenames, full path to long sequence reads or MPET pairs..., optional) -t step of sliding window when extracting k-mer pairs from long reads (default -t 2, optional...2144 days ago
Bioinformatics in Africa:- Part 1
...interdisciplinary creating a network of scientific information available to the researchers of the institute and partners Longterm training a...1183 days ago
- ...Email Address Username Account username used for logging in Password Account password must be at least 6 characters long Password Again Re...
886 days ago
- ...ell. MetaSim wgsim SimNGS ArtificialFastqGenerator InSilicoSeq Long Read Simulators With the adv...generation sequencing (TGS) technologies. Currently, many of the popular long read simulators are designed...
577 days ago
Bioinformatics tools for genome assembly !
...gies, such as Illumina and PacBio. Canu: A long-read assembler optimized for...d Oxford Nanopore sequencing data. Flye: A long-read assembler suitable for b.... Ra Assembler: A metagenome assembler for long reads, designed for highly co...280 days ago
Mitochondrial genome assembly tools !
...for de novo assembly of organelle genomes, including mitochondria. It utilizes a seed-and-extend algorithm and is suitable for both short-read and long-read data. MITOS2: MITOS2 is...236 days ago
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