Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completely sequenced g...programming infrastructure often employed for the analysis of large numbers of genes, long...3779 days ago
3646 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotat...3567 days ago
Junk part of the human genome unlocked
More: Texas A&M Biologists Unlock Non-Coding Half of Human Genome with Novel DNA Sequencing Technique http://www.science.tamu.edu/news/story.php?story_ID=1282#.VDbBQ...3489 days ago
3330 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads wit...3217 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproducible...Ensembl Protein Families, GeneTrees and homologies for both protein-coding and non-...2981 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It ca...tp://bioinformatics.oxfordjournals.org/content/early/2013/03/09/bioinformatics.btt086.long2943 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz...e quality per base drops below 15 (SLIDINGWINDOW:4:15) Drop reads below the 36 bases long...2935 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or...seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. Another simple, but...us alignment statistical parameters (mutation bias along...2918 days ago