Results for "Lumpy"
Blogs
Structural variation: the hidden genomic treasure
...BreakDancer http://breakdancer.sourceforge.net/ Variation Hunter http://compbio.cs.sfu.ca/software-variation-hunter Lumpy https://github.com/arq5x/lumpy-sv ForestSV http://seba...2700 days ago
Bookmarks
- ...y. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M Hall. 2014. "LUMPY: a Probabilistic Framework fo...sp;doi:10.1186/gb-2014-15-6-r84. More at https://github.com/arq5x/lumpy-sv
2807 days ago
- ...e structural variant calls on whole-genome sequencing data. It can run the following callers: Breakdancer, Breakseq2, CNVnator, Delly2, Manta, and Lumpy. Because of synergies in how...
1435 days ago
Top-level pages
Some useful Bioinformatics links
...pping of nanopore sequencing reads with GraphMap | Nature Communications https://www.nature.com/articles/ncomms11307 lumpy-sv/extractSplitReads_BwaMem at master · arq5x/lumpy-sv https://github.com/arq5x/...2239 days ago
Bio-Scripts
Download lumpy skin disease data !
Location https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=880745 The raw genome sequence data from the 2022 outbreak in India is available in the SRA Project PRJNA880745407 days ago
Tags
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M Hall. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biology 15 (6): R84. doi:10.1186/gb-2014-15-6-r84. More at https://github.com/arq5...
Tags: Bioinformatics, Analysis, NGS, Lumpy, SV, Variation, Structure, Genome
2807 days ago
Comments
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probabilistic framework for stru...1139 days ago
