BOL: Results for "Lumpy"

Results for "Lumpy"

- Jit@jit.aber
Structural variation: the hidden genomic treasure
...BreakDancer http://breakdancer.sourceforge.net/ Variation Hunter http://compbio.cs.sfu.ca/software-variation-hunter Lumpy https://github.com/arq5x/lumpy-sv ForestSV http://seba...
2715 days ago

- Shruti Paniwala@shruti
LUMPY
...y. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M Hall. 2014. "LUMPY: a Probabilistic Framework fo...sp;doi:10.1186/gb-2014-15-6-r84. More at https://github.com/arq5x/lumpy-sv
2822 days ago
- Jit@jit.aber
Parliament2: Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
...e structural variant calls on whole-genome sequencing data. It can run the following callers: Breakdancer, Breakseq2, CNVnator, Delly2, Manta, and Lumpy. Because of synergies in how...
1449 days ago

- Jit@jit.aber
Some useful Bioinformatics links
...pping of nanopore sequencing reads with GraphMap | Nature Communications https://www.nature.com/articles/ncomms11307 lumpy-sv/extractSplitReads_BwaMem at master · arq5x/lumpy-sv https://github.com/arq5x/...
2253 days ago

- BioStar@biostar
Download lumpy skin disease data !
Location https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=880745 The raw genome sequence data from the 2022 outbreak in India is available in the SRA Project PRJNA880745
422 days ago

- Rahul Nayak@rahul
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probabilistic framework for stru...
1154 days ago