Results for "MD"
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Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from Gene Ontol...1930 days ago
DISTRUCT: a program for the graphical display of population structure
...bsp;plot in Science 298: 2381-2385 (2002). Please send comments or problems with distruct to Noah Rosenberg. October 15, 2014 — Users of Distruct may als...1866 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
...ulate new ones. Genomic variants can be simulated using summary statistics, phylogenies, Variant Call Format (VCF) files, and coalescent simulations—the latter of which can in...1743 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
Miniasm is a great long-read assembly tool: straight-forward, effective and very fast. However, it does not include a polishing step, so its assemblies have a hi...1613 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significan...1580 days ago
ngs-bits - Short-read sequencing tools
Binaries of ngs-bits are available via Bioconda. Alternatively, ngs-bits can be built from sources: Binaries for Linux/macOS From sources for Linux/macOS From sources for Windows1568 days ago
- ...Chemical Engineering and Biotechnology), GBM (Society for Biochemistry and Molecular Biology) and GDCh (German Chemical Society). In fall 2015, the GMDS (German Society for Medical...
1544 days ago
tinycov: standalone command line utility written in python to plot coverage from a BAM file
...verage plotter. To install the stable version: pip3 install --user tinycov To install the development version: git clone https://github.com/cmdoret/tinycov.git cd tinycov...1502 days ago
- 2019nCoVR features comprehensive integration of genomic and proteomic sequences as well as their metadata information from the GISAID, NCBI, NMDC and CNCB/NGDC. It also incorporates...
1457 days ago
ShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes
...uo;alien genes’ with an unusual sequence composition according to the host genome background to detect HGT events in prokaryotes. https://www.mdpi.com/2073-4425/11/7/756/htm...1389 days ago
