682 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...We hope that IONiseR will provide a framework for visualisation of metrics that we haven’t thought of, and welcome feedback at mike.smith@embl.de. If you’...2368 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
Mike Bostock’s D3.js is great for creating interactive network graphs with JavaScript. The d3Network package makes it easy to creat...2234 days ago
Python learning resources for bioinformatics and computational biologist !
...ll the fields with any values) High Performance Python (PDF) Hitchhiker's Guide to Python! (2.6) How to Make Mistakes in Python - Mike Pirnat (PDF) (1st edition) H...2268 days ago
3881 days ago
2347 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
MIKE (MinHash-based k-mer algorithm). This algorithm is designed for the swift calculation of the Jaccard coefficient directly from raw sequencing reads and enables the construction of phylogenetic trees based on the resultant Jaccard coefficient. Simulation results highlight the superior sp...Tags: MIKE, ultrafast, assembly, alignment-free, approach, phylogenetic, tree, construction
40 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...e or gigabyte Genome Spot CoreGenomics The Genome Factory RajLab Omics! Omics! Next-Gen Sequencing Blasted Bioinformatics!? Mike Love’s blog gene...2334 days ago