PerlOneLiner for Bioinformatician
...um of all the fields on a lineperl -MList::Util=sum -alne 'print sum...of all the fields on all linesperl -MList::Util=sum -alne 'push @S,@...ext' # Generate the power setperl -MList::PowerSet=powerset -le '@l...[^ -~]/ # Match text between two HTML tagsm|<strong>([^<]*...2317 days ago
List of visualization tools for network biology
...BioGRID, DIP, HPRD, IntAct and MINT http://bioinfow.dep.usal.es/apid/ Arcadia Translates text-based descriptions of biological networks (SBML files) into standardized diag...2303 days ago
List of visualization tools for genome alignments
...single-end and pair-end short reads http://omictools.com/mapview-s1367.html MultiPipMaker Computes alig...tion files in NGS studies http://sing.ei.uvigo.es/pileline/pilelinegui.html SAMtools tview Simple...2299 days ago
Computational resources for TE discovery and TE detection
...//www.genetics.uga.edu/retrolab/data/LTR_Struc.html LTR_MINER http://genomebiol...K http://wesslercluster.plantbio.uga.edu/mak06.html MaskerAid http://blast.wust...em Repeats Finder http://tandem.bu.edu/trf/trf.html Transposon Cluster Finder h...2289 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...in a gene by HGT, foreign DNA must enter the host nucleus, integrate into the genome, and in more complex organisms it must enter the sequestered germline in order to be transmitted...865 days ago
Python learning resources for bioinformatics and computational biologist !
...Python Tutorial A Byte of Python (3.x) (HTML, PDF, EPUB, Mobi) A Guide to...cations in Python the antitextbook (3.x) (HTML, PDF, EPUB, Mobi) Building M...F) Python 2 Official Documentation (PDF, HTML, TEXT) (2.x) Python 2.7 quic...2270 days ago
Some useful Bioinformatics links
...b.io/picard/command-line-overview.html Chromosome-scale scaffolding...nt/software/algorithms/algorithms.html Measuring the distance betwee...ttp://www.htslib.org/doc/samtools.html How To Filter Mapped Reads Wi...stz-1.02.00/README.lastz-1.02.00a.html SOGo - (1652) Inbox https://...2256 days ago
Installing Bio::SCF perl module
...F-1.01] perl Makefile.PL []Checking if your kit is complete...Looks goodGenerating a Unix-style MakefileWriting Makefile for Bio::SCFWriting MYMETA.yml and MYMETA.jsonjitendra@jiten...2233 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of int...2217 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a crucial role in biology, medicine and the pharmaceutical industry. PPIs can be investigated from two aspe...2217 days ago