2957 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
...he average quality per base drops below 15 (SLIDINGWINDOW:4:15) Drop reads below the 36 bases long (MINLEN:36) More at http://www.usadellab.org/cms/?page=trimmomatic2957 days ago
2946 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
...ox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. The..., including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, ani...2944 days ago
2929 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the...2929 days ago
Hagfish - assess an assembly through creative use of coverage plots
...is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in...2921 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...Uniquely among current mapping tools, MOSAIK can align reads generated by all the major sequencing technologies, including Illumina, Applied Biosystems SOLiD, Roche 454, Ion Torrent...2921 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://ge...2920 days ago
2909 days ago