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Results for "MUMmer"

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• • Abhimanyu Singh@abhimanyu

  

  Assembly comparison https://github.com/WGLab/uniline/tree/master/src/assembly_comparison #NGS #Assembly #MUMMer

  Tags: NGS, Assembly, MUMMer

  2608 days ago

• • Jit@jit.aber

  

  http://qb.cshl.edu/assemblytics/ #Analysis #Genome #Mummer #Assembly #Assemblytics

  Tags: Analysis, Genome, Mummer, Assembly, Assemblytics

  2115 days ago

• • Jit@jit.aber

  

  Ribbon genomics http://genomeribbon.com/ #Visualization #Ribbon #Graph #Genome #BAM #SAM #Mummer

  Tags: Visualization, Ribbon, Graph, Genome, BAM, SAM, Mummer

  1977 days ago

• • LEGE@lege

  

  Mummer alignment to circos plotting https://github.com/metagenlab/mummer2circos #Mummer #Circos #Plot #Draw #Circular

  Tags: Mummer, Circos, Plot, Draw, Circular

  114 days ago

• • Rahul Nayak@rahul

  

  dotPlotly: Generate an interactive dot plot from mummer or minimap alignments

  Create an interactive dot plot from mummer output OR PAF format R script that makes a plotly interactive and/or static (png/pdf) dot plot. Shiny app available for testing

  Tags: dotPlotly, Generate, interactive, dot, plot, mummer, minimap, alignments

  1892 days ago

• • Rahul Nayak@rahul

  

  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (v4) to detect variants.

  MUM&Co is able to detect:Deletions, insertions, tandem duplications and tandem contractions (>=50bp & <=150kb)Inversions (>=1kb) and translocations (>=10kb)

  Tags: MUM&Co, simple, bash, script, Whole, Genome, Alignment, information, MUMmer, detect, variants

  731 days ago