Results for "MV data analysis"
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Genome STRiP (Genome STRucture In Populations) is a suite o...l variations using sequencing data. The methods are designed to...detect shared variation using data from multiple individuals.Gen...ive and support heterogeneous data sets, including variations in...enomes, you need to call your data aga...2811 days ago
- ...ces for learning more about PacBio data and bioinformatics analysis, and includes content sui...to help you get started with your data processing, as well as inform...De Novo Assembly Transcriptome analysis Base Modification Analysis Barcoding Data Analysis Tools Minor Variants an...
2640 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source...particular, Bambus is able to accept contig linking data other than specified by mate-...irectly use the output of MUMmer), physical mapping data, or...
2832 days ago
- ...e that enables to analyse RNA-seq data with or without a reference g...n. It has been tested on Illumina datasets of up to 1G reads. Its me...reatments meant to facilitate the analysis of the results. The choice of...he need to perform a differential analysis, as summarised in the followi...
2832 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1239 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the h...t boundaries and family relationships from sequence data. RepeatModeler assists in aut...g the runs of RECON and RepeatScout given a genomic database...
2830 days ago
- Most variant calling pipelines result in files containing large quantities of variant...cf) is an increasingly popular format for this data. The format of these files an...eir content is discussed in the vignette ‘vcf data.&rs...
2829 days ago
- Recent technological progress has greatly facilitated de novo genome sequ...irming and improving the quality of such assemblies is critical for subsequent analysis. Visualization and qua...
2824 days ago
Sushi: An R/Bioconductor package for visualizing genomic data
Sushi: An R/Bioconductor package for visualizing genomic data2817 days ago
- Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a...ge of species. GeneMark-ET is a gene prediction tool that incorporates RNA-Seq data int...
1964 days ago
