2468 days ago
LIBSVM -- A Library for Support Vector Machines
...ed in this paper:R.-E. Fan, P.-H. Chen, and C.-J. Lin. Working set selection using second order information for training SVM. Journal of Machine Learning Research 6, 1889-1918, 2005....2466 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software....of noise between bases and cycles observed in an actual run of the machine,...2348 days ago
mojolicious: a next generation web framework for the Perl programming language.
Back in the early days of the web, many people learned Perl because of a wonderful Pe...ithout knowing much about the language and powerful enough to keep you going, learning by doing was much fun. While...2302 days ago
GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.2162 days ago
2159 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...he underlying technology into account. Memory- and time- efficient machine learning algorithms that address thes...chnologies. Results: We designed and developed Hercules, the first machine learning-based long read error correct...2082 days ago
1994 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental desi...ines or hybrids. GWASpro provides an interface that significantly reduces the learning curve for new GWAS investigat...1974 days ago
HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correction framework that determines a corr... HECIL’s core algorithm by introducing an iterative learning paradigm that enhances the co...1949 days ago