Results for "Map Autom Service"
Bio-Scripts
Install ATOM editor on Elemantory OS / Ubuntu
...The following packages were automatically installed and are no...s will be installed: gconf-service gconf-service-backend gconf2-common libgcon...u bionic/universe amd64 gconf-service-backend amd64 3.2.6-4ubuntu1...1.54.0) ... Setting up gconf-service-backend (3.2.6-4ubuntu1) ......1196 days ago
Calculate some statistics for a DNA alignment with Perl
use Bio::AlignIO; use Bio::Align::DNAStatistics; my $stats = Bio::Align::DNAStatisti...data/nei_gojobori_test.aln'); my $alnobj = $in->next_aln; my ($seq1id,$seq2id) = map { $...2669 days ago
Check overlapping range with Perl
#!/usr/bin/perl use strict; use warnings; my @ranges = 0; push @ranges, $ranges[-1] + 1 + int rand 200 for 1..10000; my @tests = map int...2647 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) use strict; us...ly survivors from the population, # then use map to have only the fitness come through my @weights = map {...length($_) < $max_entry_length } map { u...2392 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2160 days ago
Perl subroutine to read genome/reads fasta file !
sub readSeqFromFasta{ my $file = $_[0]; my (%map,$id,$seq); open(IN,$file) or die("Cannot open file...=~ /^>/){ if(defined $id && defined $seq){ $map{$...=~s/>//; } else { $seq=$seq.$_; } } $map{$id...2153 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa reads.fa...ho -e "This is a bash scrip to map your long reads and make it v...e/anaconda3/bin/samtools graphMapLoc=/home/urbe/Tools/graphmap/...rovided" echo "#USAGE: runMappe...fi elif [ $toolName == "minimap2" ]...2143 days ago
Perl script to create a consensus of nucleotide sequences !
use strict; use warnings; my @instances = qw ( AAAAA ATCGA ATAAA ); my @instances2 =...=>[] ); s/\s//g for @mi; my ($w) = sort {$b $a} map {...= ( a=>0, t=>0, c=>0, g=>0 ); my @mi_letters = map { [...2052 days ago
Installing pb-assembly on Linux !
...conda-forge minimap2: 2.12-ha92aebf_...oconda are not covered by any service # # level agreement or...Scientist or PacBio Customer Service for assistance with any # #...fc_get_read_ctg_map fc_phasing_readmap.py...2054 days ago
Setting up falconUnzip conda environments for genome assembly !
...68 KB conda-forge minimap2-2.14 | ha...conda-forge minimap2: 2.14-ha92aeb...################ | 100% minimap2-...oconda are not covered by any service # # level agreement or th...Scientist or PacBio Customer Service for assistance with any # #...2010 days ago
