miniasm: very fast OLC-based de novo assembler for noisy long reads
...isy long reads. It takes all-vs-all read self-mappings (typically by minimap)...pore (ONT) bacterial data sets. Including the mapping step, it takes about 3 minute...nimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed f...2350 days ago
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snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-C...1801 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then...2201 days ago
MITObim - mitochondrial baiting and iterative mapping
This document contains instructions on how to use the MITObim pipeline described in Hahn et al. 2013. The full article can be found here. Kindly cite the article i...2188 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single referenc...2188 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...ome: the same sequencing data can be used for the assembly and for the mapping of the reads. A full document...rm the merging is available here. We recommend BWA for mapping of the reads. When the mappi...2166 days ago
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