Comment on "List of popular bioinformatics software/tools"
Mapping single molecule sequencing reads using Basic Local Alignment with Successive Refinement (BLASR) http://bix.ucsd.edu/projects/blasr/3003 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
Mapping tutorial https://wikis.utexas.edu/display/bioiteam/Mapping+tutorial3578 days ago
3581 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
...ucr.edu/illumina_docs/Velvet:http://www.ebi.ac.uk/~zerbino/velvet/Maq (Mapping and Assembly with Quality): h...enomes.org/downloads/shore.htmlCloudBurst (Highly Sensitive Short Read Mapping with MapReduce): Please igno...3615 days ago
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3641 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...rangement tool) can be used to order a set of contigs with respect to a single reference genome. This is done by mapping the contigs onto the reference using a q-gram filter. The mapping is visualized in a synteny pl...3668 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
ANGUS is a site built around the 2010 course on Analyzing Next-Generation Sequencing Data. It contains a number of detailed tutorials on mapping, assembly, mRNAseq, ChIP-seq, and resequencing analysis. Enjoy! http://ged.msu.edu/angus/index.html3899 days ago