Results for "Mapping"
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Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the candidate introns and adding up ...Tags: NCBI, Magic-BLAST, Documentation, RNA-seq, Mapping, BLAST
2083 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase in the number of sequenced genomes, both prokaryotic and eukaryotic. However, short reads are difficult to assemble and often lead to highly fragmented assemblies. The recent developments in long reads sequencing m...Tags: CoLoRMap, Correcting, Long, Reads, Mapping, short, reads, pacbio
2078 days ago
BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus
BAUM, breaks the whole genome into regions by adaptive unique mapping; then the local OLC is used to assemble each region in parallel. BAUM can: (1) perform reference-assisted assembly based on the genome of a close species; (2) or improve the results of existing assemblies that are obtained base...Tags: BAUM, Improving, Genome, Assembly, Adaptive, Unique, Mapping, Local, Overlap-Layout-Consensus, OLC
2012 days ago
FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as an input, and provides extensive functional annotation for all SNPs in genomic areas identified by lead SNPs. The GENE...Tags: FUMA, GWAS, Functional, Mapping, Annotation, Genome-Wide, Association, Studies
1793 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many types of genomic analysis, such as variant calling and gene expression analysis. Here are some general steps to follow for mapping reads to a genome: Choose a read mapper: There are many read mappers availab...Tags: Reads, Mapping, Steps, Methods, NGS
416 days ago
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