2944 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which...uch as HOMER. Setting up your computing environment Retrieving and storing sequencing files (your own data or...2944 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or O...2927 days ago
2927 days ago
2927 days ago
Hagfish - assess an assembly through creative use of coverage plots
...a analysis of Next Generation Sequencing (NGS) experiments. Hagf...ural variation in a genome re-sequencing experiment. Hagfish re...reference sequence and a paired end re-sequencing data set....larger the insert size of the paired end library is. Quick links:&nbs...2920 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-so...mapping second and third-generation sequencing reads to a reference genome....ign reads generated by all the major sequencing technologies, including Illum...mappings for all the generated data (sequencing technologies, low-coverage an...2920 days ago
2920 days ago
2906 days ago
2896 days ago