GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.2172 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end...This tool aims to improve the completeness of both protein-coding and non-coding genes....scaffolding human contigs, the structures of both protein-coding genes and circular RNA...2162 days ago
2182 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome...another practical alternative to existing mate-pair_based approaches or other Protein-based approaches (for instanc...2076 days ago
STRUM: structure-based prediction of protein stability changes upon single-point mutation
STRUM is a method for predicting the fold stability change (ΔΔG) of protein molecules upon single-point n...low-resolution structure models from protein structure prediction, which h...od and make it applicable to various protein seqences, including those wit...2072 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene...calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict...2049 days ago
FRODOCK 2.0: fast protein–protein docking server
frodock: a user-friendly protein–protein docking server based on an improved version...a very effective tool to explore and select protein–protein models and inte...d allow the retrieval of reliable potential protein–protein binding conform...2036 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment module). For Annotate module, it accepts gene list a...2033 days ago
2028 days ago
Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life
Ancestral Genomes (http://ancestralgenomes.org) is a resource for comprehensive reconstructions of these ‘fossil genomes’. Comprehensive sets of protein-coding genes have been recons...2019 days ago