Results for "Meta"
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MetaPred2CS Web server is a meta-predictor based on Support Vector Machine...nteractions (PPIs). The methods implemented in MetaPred2CS are 2 co-evolutionary...d gene operon methods (GO). http://metapred2cs.ibers.aber.ac.uk/2620 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1226 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
...takes as input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph should appear in fasta format with 1 entry per node, the meta information should be in the...1982 days ago
EWAS: epigenome-wide association study software 2.0
...me-wide single marker association study; (2) epigenome-wide methylation haplotype (meplotype) association study; and (3) epigenome-wide association meta-analysis.2237 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV calle...2099 days ago
Roary: the Pan Genome Pipeline
...f RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing ext...1930 days ago
- Chromosome-level genome assembler combining multiple de novo assemblies https://github.com/jkimlab/IMAP
1709 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
...rious types in both single-sample and matched sample scenarios. SVEngine takes as input reference contigs in FASTA files, variant meta distribution as specified in META files (see Manual) or specifi...1401 days ago
- ...y be necessary to install required as not all package dependencies are installed by devtools: install.packages(c("dplyr","tidyr","ggplot2","MASS","meta","ggrepel","DT")) devtools::...
1374 days ago
- an integrated bioinformatics pipeline for the detection of TE insertions in whole-genome shotgun data, called McClintock (https://github.com/bergmanlab/mcclintock), wh...
1286 days ago
