2634 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1239 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
...takes as input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph should appear in fasta format with 1 entry per node, the meta information should be in the...1995 days ago
EWAS: epigenome-wide association study software 2.0
...me-wide single marker association study; (2) epigenome-wide methylation haplotype (meplotype) association study; and (3) epigenome-wide association meta-analysis.2250 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV calle...2112 days ago
Roary: the Pan Genome Pipeline
...f RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing ext...1944 days ago
1722 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
...rious types in both single-sample and matched sample scenarios. SVEngine takes as input reference contigs in FASTA files, variant meta distribution as specified in META files (see Manual) or specifi...1415 days ago
1388 days ago
1300 days ago