Results for "Metagenomes"
Blogs
BBTools for bioinformatician !
...errors=false out=2snps.fastq reads=1000 minlength=18 maxlength=55 seed=5 [As of BBmap v. 36.59] rendomreads.sh gains the ability to simulate metagenomes. coverage=X will automat...2262 days ago
10 NGS services companies around the globe !
...eas. It also provides next generation sequencing services including genomes, targeted (re)-sequencing, human sample sequencing, transcriptomes, metagenomes, regulomes, pre-sequencing, N...1251 days ago
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Bookmarks
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple assembli...2942 days ago
- ...ngle and metagenomic assemblies, including single-base errors, insertions/deletions, genome rearrangements and chimeric assemblies presented in metagenomes. At the genome level with rea...
2923 days ago
- +14 more Bookmarks
Files
- .... In this article we present protocols for five different assembly pipelines that comprise the SPAdes package and that are used for assembly of metagenomes and transcriptomes as well as...
816 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...bly. ISSAKE – Short Read Sequence AssemblyiSSAKE (immuno-SSAKE) is a sequencing approach and assembly software for profiling T-cell metagenomes using short reads from the ma...2677 days ago
Awesome perl frameworks, libraries and software - PART 4
...mages From Eye-Fi Cards kirei/fpdns - Net::DNS::Fingerprint gjospin/PhyloSift - Phylogenetic and taxonomic analysis for genomes and metagenomes chrispix/symbolicatecrash-fi...2486 days ago
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...an understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled...ets MetaCAA is a sequence-assembly tool specifically intended for metagenomes. Contiguity 1.0.4 &ndash...2677 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a gen...2306 days ago
Wire posts
Bio-Scripts
Tadpole is 250x faster than SPADes assembler !
...tig. It is recommended that mce=1 for low-depth metagenomes. mincountretain=0 (mincr)...ter assemblies for low-depth data, but they are very slow for large metagenomes. Overlap parameters (for o...968 days ago
