SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes via binning procedures. Thus, SqueezeMeta featur...Tags: SqueezeMeta, fully, automated, metagenomics, pipeline, reads, bins
1361 days ago
Tags: MetaEuk, sensitive, high-throughput, gene, discovery, annotation, large-scale, eukaryotic, metagenomics
1211 days ago
CoverM: Read coverage calculator for metagenomics
CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications. CoverM calculates coverage of genomes/MAGs coverm genome (help) or individual contigs coverm contig (help). Calculating coverage by...Tags: Read, coverage, calculator, metagenomics, CoverM
1105 days ago
ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
ContigExtender, was developed to extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy that explores multiple extending paths to achieve longer and highly accurate contigs. ContigExtender is effective for extending cont...Tags: ContigExtender, approach, improve, de novo, sequence, assembly, viral, metagenomics, data
10 hours ago
Tags: Metagenomics, bioinformatics, microbiology, sequencing
3886 days ago
Workshop on population and metagenomics analysis @ NERC
Workshop Overview A ten-day workshop taking place between 25 February - 6 March 2014 providing detailed hands-on training for population and meta-genomics analysis for researchers with little or no background in mathematics or computing. Venue: Dartington Hall, Totnes, Devon (nearest train ...Tags: NERC, Workshop, Population, Metagenomics, UK
3811 days ago
Tags: Microbiology, Metagenomics, Next Generation Sequencing
3174 days ago
Tags: Scaffolders, Bioinformatics, Assembly, Metagenomics
2822 days ago
Tags: Bioinformatics, Analysis, NGS, HeatMap, Genome, Shinyheatmap, R, Visualize, Map, Transcriptomics, Metabolomics, Metagenomics
2757 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Bin, Binning, Metagenomics
2621 days ago