heatmaply: popular graphical method for visualizing high-dimensional data
...ly also provides an interface based around the plotly R package. This interface can be used by choosing plot_method = "plotly" instead of the default plot_method = "ggplot". This interface ca...1580 days ago
1570 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
...evlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single nucleotide varia...1563 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list...1563 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
...positive cycles. Our solution is to search the graph in multicores shared memory parallel mode using graph decomposition then use filtering method to generate good quality SNPs...1563 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory...1556 days ago
CLARK: Fast, accurate and versatile sequence classification system
CLARK, a method based on a supervised sequence classification using discriminative k-me...outperforms in classification speed and precision the best state-of-the-art methods. http://clark.cs.ucr.edu/Sp...1545 days ago
SvABA: Structural variation and indel detection by local assembly
SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA ...1521 days ago
proActiv: Estimation of Promoter Activity from RNA-Seq data
...olute and relative promoter activity as output. The package can be used to identify active promoters and alternative promoters, the details of the method are described in Demirci...1365 days ago
939 days ago