Use multi-core with Perl programs http://perltricks.com/article/61/2014/1/21/Make-your-code-run-faster-with-Perl-s-secret-turbo-module #Perl #MCE #Speed #Module
Multi fasta to single fasta files $ perl -ne 'if (/^>(\S+)/) { close OUT; open OUT, ">$1.fasta" } print OUT' genome.fasta #Multi-fasta #fasta #multi #genome #files
Comparative Genomics Study of #Multi-Drug-Resistance #Mechanisms in the #Antibiotic-Resistant Streptococcus suis R61 Strain https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3180280/
#Convert a #multi-line #fasta to a #singleline #fasta $ awk '!/^>/ { printf "%s", $0; n = "\n" } /^>/ { print n $0; n = "" } END { printf "%s", n }' sample1.fa > sample1_singleline.fa