SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assem...1370 days ago
parallelLastz: Lastz with multi-threads support.
Running Lastz (https://github.com/lastz/lastz) in parallel mode. This program is for single computer with multiple core processors. When the query file format is fasta, you can spec...1365 days ago
Platypus – R package for object detection and image segmentation.
...segmentation. Currently using platypus you can perform: multi-class semantic segmentation using U-Net architecture multi-class object detection using&...1286 days ago
Kmer: a suite of tools for DNA sequence analysis
...ed for high-throughput batched alignment. LEAFF: LEAFF (ahem, Let's Extract Anything From Fasta) is a utility program for working with multi-fasta files. In addition to p...1004 days ago
odgi: optimized dynamic genome/graph implementation
...o efficiently compute and transform pangenomes with minimal overheads. odgi implements a dynamic data structure that leveraged multi-core CPUs and can be updated...836 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
...based on HMM profiles or de novo inference of orthogroups. Through the use of OrthoSNAP, many additional ortholog alignments can be generated from multi-copy gene families. For phylo...87 days ago
51 days ago