List of visualization tools for genome alignments
...ument/cda_downloaddocument/9789401792448-c2.pdf?SGWID=0-0-45-1487072-p176815501 LookSeq Web-based visualization of sequences derived from multiple sequencing technologies. Low-...2284 days ago
Some useful Bioinformatics links
...d - NCBI https://www.ncbi.nlm.nih.gov/pubmed/24185095 MAFFT ver.7 - a multiple sequence alignment program h...ent/software/algorithms/algorithms.html Measuring the distance between multiple sequence alignments | Bioinfo...2242 days ago
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Tools to Predict the Impact of Missense Variants !
...s” SIFT“Predicts whether an amino acid substitution affects protein function” GERP++“Identifies constrained elements in multiple alignments by quantifying sub...2204 days ago
Tools for Protein-Protein Docking !
...h: FFT. smooth protein surface representation for soft docking Shape complementarity and Lennard-Jones potentialminimization and re-scoring with multiple filters HEX Global rigid se...2203 days ago
Creating conda environment for python2.7
...OR: conda create -n myenv python conda install -n myenv scipy=0.15.0 To create an environment with a specific version of Python and multiple packages: conda create -...2191 days ago
LINKS scaffolder bloomfilter setting !
...(ie. target distances to re-scaffold on. default -d 4000, optional) Multiple distances are separated by co...when extracting k-mer pairs from long reads (default -t 2, optional) Multiple steps are separated by comma....2152 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple processors for bioinformatics analysis. One best...quo;;close $QUAL; I would not suggest using flock when dealing with multiple processes because it will dec...2081 days ago
Bioinformatics tools for genome assembly !
...ssembler designed for short reads, widely used for assembling large and complex genomes. MaSuRCA: A hybrid assembler that combines data from multiple sequencing technologies, such...287 days ago
Mitochondrial genome assembly tools !
...assembly using the read data. MITOS: MITOS is a web-based platform that provides a pipeline for annotating mitochondrial genomes. It integrates multiple software tools for assembly,...243 days ago