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Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp411 days ago
Comment on "Benchmarking Perl Module !"
Benchmarking a Perl module involves measuring the performance of the module in terms of its execution time and memory usage. This c...nchmark: Call the timethese function from the Benchmark modul...n from the Benchmark module, and analyzing the results to com...428 days ago
Comment on "A quick guide to Phred scaling"
...Phred scaling is a widely used system for representing the quality scores of sequencing reads. It is used to quan...s a quick guide to Phred scaling: Phred quality scores:...Quality score calculation: The Phred score for each bas...428 days ago
Comment on "Short-read assembly using Spades !"
...assembly is the process of constructing a genome sequence from a lar...using SPAdes: Quality control of raw reads: Before runn...s: After quality control, the next step is to run SPAdes. Thi...hese tools assess the completeness and accuracy of the assemb...428 days ago
- ...ulators that are widely used in bioinformatics research. Here are s...d insert sizes. The ART is open-source and available for free...a profile-based approach to generate synthetic reads. It can...e choice of the simulator depends on the specific research qu...
428 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl429 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Installing in CONDA env You can check using which perl - it should give you the perl that's located within your conda environment. In th...When you install packages via cpan it will also print the folder...the beginning. In your case, conda install -c bioconda perl-lw...429 days ago
Comment on "Calculate the significance of the difference between two trends"
Useful reading material https://statsandr.com/blog/anova-in-r/431 days ago
Comment on "Short-read assembly using Spades !"
...for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore...tall SPAdes: SPAdes can be downloaded from the official websi...e files for each read. Run SPAdes: To run SPAdes, open t...gs using a text editor or a genome browser. SPAdes also pr...433 days ago
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an importan...eral tools available for sequence translation, including:.... SeqKit: This is a command-line tool that can perform s...433 days ago
