dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
While the number of sequenced diploid genomes have been steadily increasing in the la...ing HP genomes from the next generation sequencing (NGS) data. The initial approaches to assembling HP genomes were proposed in the pre-NGS era an...2348 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data....1823 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking D...ong reads outputted by third generation sequencing technology such as machines produced by...The reads produced by third generation sequencing technology, as the name suggests, are lo...2333 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Cour...ovember - Uppsala2017 November - Uppsala Introduction to Bioinformatics Using NGS Data...2231 days ago
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MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome f...2210 days ago
EAGLER: a scaffolding tool for long reads.
EAGLER is a scaffolding tool for long reads. The scaffolder takes as input a draft genome created by any NGS assembler and a set of long r...reads are used to extend the contigs present in the NGS draft...2183 days ago
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LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment ap...Gao and developed by Yan Gao in Center for Bioinformatics, Harbin Institute of Technology, China.2203 days ago