Results for "NGS data analysis"
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Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM...tion to estimate insert size distributions from data. Sc...2866 days ago
- Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It...
2866 days ago
- FQC is software that facilitates quality control of FASTQ files by carrying out a QC p...roups samples in dropdowns for navigation among the data sets, utilizes human-readable...late the pages and tabs, and is extensible with CSV data.
1285 days ago
- Microbiome analysis using a single application MEGAN6 is a comp...omy such as SILVA Functional analysis using InterPro2GO, SEED, eggN...ng and networks Supports metadata MEGAN parses many different type...sequencing reads. Blast-like analysis can be performed using DIAMON...
2854 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite o...l variations using sequencing data. The methods are designed to...detect shared variation using data from multiple individuals.Gen...ive and support heterogeneous data sets, including variations in...enomes, you need to call your data aga...
2811 days ago
- ...or learning more about PacBio data and bioinformatics analysis, and includes content sui...elp you get started with your data processing, as well as inform...Novo Assembly Transcriptome analysis Base Modification Analysis Barcoding Data Analysis Tools Minor Variants an...
2640 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source...particular, Bambus is able to accept contig linking data other than specified by mate-...irectly use the output of MUMmer), physical mapping data, or...
2832 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference ge...It has been tested on Illumina datasets of up to 1G reads. Its me...tments meant to facilitate the analysis of the results. The choice of...need to perform a differential analysis, as summarised in the followi...
2832 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1239 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the h...t boundaries and family relationships from sequence data. RepeatModeler assists in aut...g the runs of RECON and RepeatScout given a genomic database...
2830 days ago
