Results for "NGS data analysis"
Top-level pages
Single Cell RNAseq data analysis tutorial !!
...ul links: Single Cell RNAseq data analysis Tutorial A step-by-step workflow for low-level analysis of single-cell RNA-seq data A step-by-step workflow for low-...pplied to single-cell RNA-seq data separate biological drivers from...uation in single-cell RNA-seq analysis https://github.com/zji90/TSC...2353 days ago
- ...of the major steps in RNA-seq data analysis, including experimental d...of best practices for RNA-seq data analysis RNA-seq workflow: gene-...ene and transcript expression analysis of RNA-seq experiments with T...Seq exercise An open RNA-Seq data analysis pipeline tutorial with a...
2353 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s the case - you want to r...that using the ‘git’ program: git clone https://github.com/ngs-docs/ngs-scri...2339 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (...es the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours per...umbers to the user's sequence data by BLAST searches, respectively,...hine and supported by updated databases will enable biologists to pe...2334 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the wo...messy scripts that spew warnings to STDERR, you're a decade ou...ogrammers can build larger things with it. The first version of...e has been the focal point of database access since its inventio...interface to huge relational database...2323 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathe...icient integrated multi-level analysis of microarray, sequence, regulatory and other data http://www...t of algorithms, visual encodings, interaction techniques, data mode...Automatic reconstruction and analysis of biological networks and Pe...2290 days ago
List of visualization tools for genome alignments
...esults but also for improving analysis protocols, testing data quality, and generating resu..., next-generation sequencing (NGS) data and the results of analyses w...ling genome position files in NGS studies http://sing.ei.uvigo.es/p...d visualization of sequencing data http://wanglab.ucsd.edu/star/bro...2286 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...roduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experie...stem locate file — find all instances of file using indexed database built from the updatedb comma...2282 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data and is mostly used for patter...m the file. $ awk '{print;}' data/test.tsvcontig1 ACTGTCTGTCACT...1","$2;}END{print "-------"}' data/test.tsvHeader,Sequencecontig...TTTATATATT You can also store data in...2282 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evo...t in developing new methods for their computational analysis. Following are the list...r/ LTR_STRUC http://www.genetics.uga.edu/retrolab/data/LTR_Struc.html LTR_MINER http:/...2276 days ago
