Tadpole is 250x faster than SPADes assembler !
...Controls whether a path appears to be continuous. pathsimilarityconstant=3 (psc) Absolute differences below this are ignored. errorextensionreassemble=5 (eer) Verify this...991 days ago
965 days ago
Inreractive SCP / File transfer !
#!/bin/bash #next line prints hearer of script echo "Interactive Script to Copy File (files) / Directory using scp" #next line check if entered value is not null,...965 days ago
Command line to download blast database / protein
#download all available nr - protein database as a single file #Database...ov/blast/db/ # Database detail / description nr.*tar.gz | Non-redundant prote...wnload wget 'ftp://ftp.ncbi.nlm.nih.gov/blast/db/nr.*.tar.gz' #cat them into o...958 days ago
Downloading mmseqs databases !
...- UniProtKB/TrEMBL Aminoacid yes https://www.uniprot.org/help/uniprotkb - UniProtKB/Swiss-Prot Aminoacid yes https://uniprot.org - NR Aminoacid...957 days ago
909 days ago
Split the string with underscore and store values in array with AWK !
more enriched_ids | grep "WP_" | awk '{split($2,a,"_"); print a[4]"_"a[5]}' #Other extraction more enriched_ids | grep "WP_" | awk '{split($2,a,"_"); print a[4]"_"a[5]}'> enriched_ids_list awk 'NR==FNR{tgts[$1]; next} $1 in tgts' enriched_ids_list result/GO.out > enriched_GO.out.xls909 days ago
Extract the values using ids !
#Awk script awk 'NR==FNR{tgts[$1]; next} $1 in tgts' file1 file2 Look: $ cat file1 11002 10...item 7 84156 item 6 572546 item 7 693661 item 7 $ awk 'NR==FNR{tgts[$1]; next} $1 in tg...909 days ago
865 days ago
Command line to print disk usage on Linux terminal !
#Print disk usage - perl du -h |perl -e'%h=map{/.\s/;99**(ord$&&7)-$`,$_}`du -h`;die@h{sort%h}' #Bash du -k * | sort -nr | cut -f2 | xargs -d '\n' du -sh #Base du -scBM | sort -n #More du -s * | sort -rn | cut -f2- | xargs -d "\n" du -sh829 days ago