Results for "NT"
Top-level pages
Quick next generation sequencing (NGS) terms definition
...rom both ends of longer fragments. The lengths of these fragments are assumed to be sampled fr...e paired ends span within an interval [δmin,δmax]....a read pair is called concordant if they can be mapped to the...reference genome by breaking into two sub-reads is called a sp...2535 days ago
Awesome perl frameworks, libraries and software - PART 1
...ort and Suricata rule management (from Google code) hollie/mi...or/Net-Twitter - A Perl interface to the Twitter APIs kr...nbsp;- Perl ACS server implementing CWMP protocol to manage CP...A command-line utility for controlling squeezebox network aud...2502 days ago
- .... This method requires Perl runtime to be present in the syste...ect package to read the entire workbook, and then load th...nbsp; # documentation > mydata&nb...row of the data file should contain the column names instead o...
2501 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...ary history. cDNA -- Complementary DNA; DNA that is synthesiz...cladogenesis -- The development of a new clade; the splitting...a under consideration. The points at which lineages split repr...e phylogeny than the most recent common ancestor of the taxa u...2474 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of re...salmon/ RNA-Skim RNA-seq quantification at transcript-level...genome assembly with error-containing long sequence (e.g., ON...embled Illumina, PacBio, and ONT data (based on MinHash dimens...2383 days ago
- ...asmidSPAdes pipeline for plasmid detection --iontorrent this flag is requi...t; = 1,2,..,9) --pe<#>-<or> orientation of reads for paired-end...--tslr <filename> file with TSLR-contigs --trusted-contigs &...
2363 days ago
Single Cell RNAseq data analysis tutorial !!
...nbsp;samples of the same tissue from different species Useful for quantifying expression signatures f...gle-cell RNA-Seq data http://biorxiv.org/content/early/2016/09/02/036558 C...pe 2 diabetes http://genome.cshlp.org/content/early/2016/11/18/gr.212720.11...2363 days ago
- ...all of the major steps in RNA-seq data analysis, including experimental design, quality control, read alignment, quantific...-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR Differential gene and transcript expres...
2363 days ago
Edit distance application in bioinformatics !
...ansposition of two adjacent characters; the longest...enshtein qw(distance); print distance("foo","four"); # p...trings There are many different modules on CPAN for calculati...PP is a pure perl implementation of the same interface....2353 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s the case - you want to retrieve all matches, or d...to help you retrieve whatever information you are interested in from the output. L...2350 days ago
