Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error cor...2022 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly...2016 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
...ibed in detail in: Nicolas L Bray, Harold Pimentel, Páll Melsted and Lior Pachter, Near-optimal probabilistic RNA-seq quantification, Nature Biotechnology 34, 525&nd...1942 days ago
1850 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...events. Using these standardized elements allows interoperability between various applications and databases. Furthermore, both due to extensible nature of XML itself and the provisi...1607 days ago
Understanding pango networks !
...system/statement-of-nomenclature-rules/ https://www.pango.network/how-does-the-system-work/what-are-pango-lineages/ Reference paper https://www.nature.com/articles/s41564-020-0770-...929 days ago
872 days ago
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
...me. Moreover, we introduce assembly quality and completeness metrics that account for the expected genomic copy numbers. More at https://www.nature.com/articles/s41592-022-01445...760 days ago
UniAligner: a parameter-free framework for fast sequence alignment
...revious studies since the sequences of the centromeres and other ETRs across multiple genomes only became available recently. More at https://www.nature.com/articles/s41592-023-01970...55 days ago