Results for "New Genome"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...ent de novo assembly of large genomes using compressed data struct...PubMed ChIP-seq and Beyond: new and improved methodologies to de...software package] Comparing genomes and assemblies; variant dete...ty of California - Santa Cruz Genome Browser is on the FAQ list...3780 days ago
List of bioinformatics open source projects/software.
.../microsoft-biology-foundation-evolves-into-new-toolkit-net-bio.aspx A langu...sequences collected from the environment. GenomeSpace http://www.genomespace.org/ Centralized web ap...ebserver (NJ, PhyML, RAxML, MAFFT, MUSCLE, Newick viewer, Horizontal gene trans...3758 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...on test bed for hypotheses of genome evolution http://acb.qfab.org...ts/gametes/?source=navbarGASP Genometric Analysis Simulation Progr...al composition of typical metagenome data sets http://ab.inf.uni-t...s/quantinemo/RECOAL Simulates new haplotype data from a reference...3738 days ago
Next generation sequencing in R or bioconductor environment
...tracklayer, GenomicFeatures and BSgenome. Compared to the IRa...SNP analysis: snpMatrix BSgenome BSgenome provides an object...ette for instructions to create a new BSgenome package if a prebuilt p...e biomaRt, IRanges, Biostrings, BSgenome, GO.db, multtest and stat pac...3626 days ago
Commercial and public next-gen-seq (NGS) software
..., such as the human reference genome. By default, BWA finds an ali...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...zner from UCSD. (published in Genome Research)RMAP (A program for...lication CNV-Seq - CNV-seq, a new method to detect copy number var...3520 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-position/ htt...3550 days ago
Apps for Busy Bioinformatics Researchers !!!
...p/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first...es to collaborators What's New in Version 1.8.1 This update...ne alsocontains an integrated genome browser with information on g...eased September 27, 2011 with new data from 1209 studies including...3542 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
...onal Institute Of Immunology, New Delhi National Centre For Plant Genome Research (NCPGR), JNU, New Delhi National Brain Resear...gy & Development Studies, New Delhi NPL - National Physic...tre for Powder Metallurgy and New Materials, ...esr ...Hyderabad...2572 days ago
Software packages for next gen sequence analysis
...f Nucleotide Databases. Whole genome alignments to a reference gen...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...om the Canada's Michael Smith Genome Sciences Centre. Perl/Linux....cation * CNV-Seq - CNV-seq, a new method to detect copy number var...3243 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different proces...v.kazusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes pathways http://www.genome.jp/kegg/ Omix Visuali...2288 days ago
