Results for "Next generation sequencing"
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HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is i...h as HOMER. Setting up your computing environment Retrieving and storing sequencing files (your own data or...2929 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or O...2912 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-...es of unwanted sequence from your high-throughput sequencing reads. Cleaning your data in...this way is often required: Reads from small-RNA sequencing contain the 3’ sequenci...
2912 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest version is...
2912 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on t...assembly or identification of structural variation in a genome re-sequencing experiment. Hagfish requires...2905 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-...ogram for mapping second and third-generation sequencing reads to a reference genome....n reads generated by all the major sequencing technologies, including Illum...ppings for all the generated data (sequencing technologies, low-coverage an...2905 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference gen...for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy...
2905 days ago
- methylKit is an R package for DNA methylation analy...nnotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its varian...t can also handle whole-genome bisulfite sequencing data if proper input format i...
2891 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visuali...al Biology special issue : Quality assessment and control of high-throughput sequencing data). It contains bash/perl...
2881 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis...ormat to be entered into GAEMR’s analysis pipeline, hence enabling the generation...
2880 days ago
