3939 days ago
List of bioinformatics open source projects/software.
...ary protein structure given assigned Residual Dipolar Coupling data SAM Tools Data format (SAM) and accompanying tool suite, for storing large nucleotide sequence alignments Staden P...3749 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ect.org/src/contrib/archive/kernelpop/MaCS Markovian Coalescent Simulator http://www-hsc.usc.edu/~garykche/Mason A package for the simulation of nucleotide data. http://www.seqan.de/pro...3729 days ago
Perl one-liner for bioinformatician !!!
...d from a to z and number 0 – 9.perl -le 'print map { ("a",”t”,”g”,”c”)[rand 4] } 1..20'#Generates a 20 nucleotide long random residue.perl -le...3620 days ago
Commercial and public next-gen-seq (NGS) software
.... ELAND - Efficient Large-Scale Alignment of Nucleotide Databases. Whole genome align...CGSC. Paper is here. SOAP - SOAP (Short Oligonucleotide Alignment Program). A program...or aggressively assembling millions of short nucleotide sequences by progressively se...3511 days ago
Software packages for next gen sequence analysis
...* ELAND - Efficient Large-Scale Alignment of Nucleotide Databases. Whole genome align...SC. Paper is here. * SOAP - SOAP (Short Oligonucleotide Alignment Program). A program...or aggressively assembling millions of short nucleotide sequences by progressively se...3234 days ago
2706 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...e detection and the classification of single nucleotide polymorphisms in transformed...NKO; can annotate SNPs, INDELs, and multiple-nucleotide polymorphisms; categorizes ef...acid predictions that are caused by multiple nucleotide variations; Uses existing ann...2901 days ago
Tools for Searching Repeats And Palindromic Sequences
...other hand; In genetics, the term palindrome refers to a sequence of nucleotides along a DNA (deoxyribonuclei...epeatMasker MUMmer (scan_for_match) Emboss Palindrome Other nucleotide repeat finding methods found...2203 days ago
2861 days ago