Results for "Number"
Bio-Scripts
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2154 days ago
- ...y 9, 2018: 11:18:50 CMD: /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity-plugins/BIN/ParaFly -c recursive_trinity.cmds -CPU 40 -v -shuffle Number of Commands: 29867 succeeded...
2141 days ago
- ...ceive suffix corresponding to read number --split-3...$sl spot length in bases, $ri read number, $rn...
2140 days ago
- ...eparated --reference= Reference proteome or transcriptome file in FASTA format --threads= Number of threads to use (default: 8...
2137 days ago
Installing Porechop on Ubuntu !
...default: 1) -t THREADS, --threads THREADS Number of threads to use for adapter...he trimming of adapters from read ends --end_size END_SIZE The number of base pairs at each end of...2120 days ago
- ...---------------------------------------- Copy Number Variant Discovery:...ools that analyze read coverage to detect copy number variants. AnnotateInterv...aryComplexity (Picard) Estimates the numbers of unique molecules in a seq...
2089 days ago
Perl script to delete the adjacent repeats !
.../g #Alternatively, if you want to ignore case when comparing, you could use: $string =~ s/(.)\1/$1/gi #And finally, if you wanted to trim any number of duplicates down to a singl...1564 days ago
To convert just one specific read group to fastq
.... set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The number of datasets to subselect from...rst N elements. Keep only valid SRR numbers. cat runinfo.txt | cut -f 1...s view -H all.bam echo "" echo "Number of alignments with read group...1556 days ago
- (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer versio...
1229 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 ---...
1456 days ago
