List of generic simulation software/tools/resource with brief description and homepage !!!
...p://users-birc.au.dk/mailund/coasim/index.htmlcosi The cosi package is written in C and...rapid whole genome simulation program http://biostat.mc.vanderbilt.edu/wiki/mai.../bcrc.bio.umass.edu/pedigreesoftware/node/5phenosim A tool to add phenotypes to...3734 days ago
Linux for bioinformatician !!!
...dle huge amount of genomic/biological data with an ease. The field of bioinformatics relies heavily on Linux-based computers and software. Although most bioinformatics programs can...3702 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle.../\u$1/g' #Camel Casingperl -pe 's|\n|\r\n|' #Convert unix new lines into DOS new lines:perl -pe 's|\r\n|\n...3625 days ago
Next generation sequencing in R or bioconductor environment
...ome of them are as follows Biostrings The Biostrings package from Bioconduct...sequence ranges, such as chromosome identifiers (sequence spac...ture for interacting with a Biostring based genome sequence. B...information to discriminate closely adjacent binding events vi...3621 days ago
Commercial and public next-gen-seq (NGS) software
...roach. Commercial. Win or Mac OS X.SHORE - SHORE, for Short Re...nell. Linux, Windows, and Mac OS X. BWA - Heng Lee's BWT Align...ojects. Requires Linux or Mac OS X. PASS - It supports Illumin...re filtered out by ignoring those kmer words with high occurre...3515 days ago
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Using Interval Trees to Query Genome Annotations by Position
...ing genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-position/ http://hackmap.blogspo...3546 days ago
Apps for Busy Bioinformatics Researchers !!!
...ible with the new update for iOS 7.1. Demo video can be found...Query GeneRIF interactions, COSMIC mutations, and CNV data fo...mmon cell lines. A subset of COSMIC containing cell lines can...provides gene and transcriptcross reference information for NC...3538 days ago
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