Results for "OS"
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..., it can be opened with the function read.spss also from the foreign package. There is a "to.data.frame" option for choosing whether a data frame is to...2486 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...is). character -- Heritable trait possessed by an organism. charac...up of organisms which includes the most recent common ancestor of al...he larger DNA sequence and the chromosome in which it occurs. ...derived. Original characters are those acquired by an ancestor deep...2459 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...assembly MHAP Produces highly continuous assembly (fully resolved chromosome arms) from third-generatio...ms present in metagenomic samples and profiles their abundances (uses composition-based approach and non-n...2368 days ago
- ...'auto'] --cov-cutoff <float> coverage cutoff value (a positive float number, or 'auto',...can be switched on or off. SPAdes takes quite a long time, so for the purposes of this practical, somethin...
2347 days ago
Single Cell RNAseq data analysis tutorial !!
...rough (replaced microarrays) in the late 00’s and has been widely used since Measures the average expression level for each gene across a large population of input...2347 days ago
Edit distance application in bioinformatics !
...tion, deletion, substitution, and the transposition of two adjacent cha...e Jaro distance allows only transposition. use Text::Le...on and substitution, it also considers the transposition of two adjacent characte...2337 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s...want to retrieve all matches, or do a reciprocal BLAST, or something. As with most programs that run on UNIX, t...2334 days ago
Tools for bacterial whole genome annotation
...to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome an...and inverted repeats, insertion sequences, transposons and other mobile elements....GE uses paired-end reads to extend contigs and close gaps within the scaffolds; (...2328 days ago
Bioinformatics Web Application Development with Perl
...with all three. These are neither the only good possibilities (think of POE or Ji...more). Yet if you want three good options to choose between, start here. Cataly...This is often sufficient to remove all but the most complicated of SQL from your...2318 days ago
- ...ed 's/@/>/'g | tr -s "/t" "/n" > OUTFILE.fasta EMBOSS:seqret Standard script that can be used for many purposes. One such use is fastq-fast...t is to discard such sequences. [-v] = Verbose - report number of sequences...
2302 days ago
