Convert VCF to tab-deilimited table
...med with GATK : java -Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \ -o r...2194 days ago
Ancestral sequence reconstruction steps !
...l of this technique – one that only started to be fulfilled in the post-genomic era. Thanks to...t_Alig.fasta 2- Your dataset has a good phylogenetic signal, is possible to perform with Tree-Puz...2191 days ago
Gap filling or Contigs extensions tools !
...vo assembly approach to fill the gap within paired reads" or "Toward almost closed genomes with GapFiller". Th...tified as overlapping your region of interest, and the set S of reads those contigs contain. Let C = C0....2177 days ago
LINKS scaffolder bloomfilter setting !
...tional) Multiple steps are separated by comma. eg. -t 10,5 -o offset position for extracting k-mer pai...PLY A BLOOM FILTER, ONE WILL BE CREATED (.bloom) -p Bloom filter false positive rate (default -p 0.001,...2163 days ago
Understanding BLASTn output format 6 !
...corelength Alignment lengthpident Percentage of identical matchesnident Number of identical matchesmismatch Number of mismatchespositive Number of positive-scoring matchesgapopen ...2150 days ago
Interview Puzzles for Bioinformatician !
These are some of the most famous Interview Puzzles being asked i...ping Coins Puzzle Three hat colors Microsoft Puzzle 25 horses 5 tracks Puzzle Gold Bar Puzzle Crossing the Bridge Puzzle Will y...CAN ONLY SAVE LIFE Specially for Microsoft Interview Puzzles, you may...2131 days ago
My commonly used commands in Bioinformatics
...nbsp; This process (Racon -> MUMmer -> SNP table) solves the problem I originally raised in this issue. So as far as I'm concerned, you can close this issue (or keep it open...2122 days ago
Parallel Processing with Perl !
...rdquo;);flock $QUAL, LOCK_EX or die “cant lock file $!”;print $QUAL “$output”;flock $QUAL, LOCK_UN or die “$!”;close $QUAL; I would not sugges...2092 days ago
2075 days ago
Bioinformatics Services / CRO Services
...neration Sequencing (NGS) Data Analysis,Computational Drug Discovery, Bioinformatics, Chemo-informatics and BIO-IT. RASA offers faster, better and cost effective cutting edge techn...1654 days ago