Bash script to get intergenic region from genome files !
#For the intergenic region, we will require the size of the chromosomes. wget http://xxx.chrom.sizes cat xxx.chrom.sizes | sed 's/^chr//' | sed 's/Cp/Pt/' > tmp mv tmp xxx.chro...1381 days ago
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Create random 1000 CNVs in genome !
...pecified: cnv_max_size = 10000 [Sun Jan 10 16:24:20 2021] Introducing random CNVs with the following parameters: > cnv_count = 100 > cnv_gain_loss_ratio = 1 > duplication_tan...1226 days ago
1218 days ago
Set up WGD environment using conda !
...tware, and you are welcome to redistribute it under certain conditions; Contact: arzwa@psb.vib-ugent.be Options: -v, --verbosity [info|debug] Verbosity level, default = info....1219 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...lding CXX object src/CMakeFiles/i-visualize.dir/PostProcessor.cpp.o [ 21%] Build...from /usr/include/c++/7/bits/ios_base.h:41,...-- Installing: /home/urbe/anaconda3/envs/wgd/./post_processing -- Installing: /...1219 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
...320-15ISK:~/Downloads/abc/bin$ sudo apt install dos2unix [sudo] password for bio...he following NEW packages will be installed: dos2unix 0 upgraded, 1 newly ins...archive.ubuntu.com/ubuntu bionic/universe amd64 dos2unix amd64 7.3.4-3 [351 kB]...1192 days ago
Install ATOM editor on Elemantory OS / Ubuntu
#Download ATOM deb file from https://atom.io/ https://atom.io/download/deb (base) bioqueen@bioqueen-Lenovo-ideapad-320-15ISK:~/Downloads/$ sudo apt install ./atom...1191 days ago