Results for "OS"
Bio-Scripts
Perl script to convert GFF 2 FASTA !
#!/usr/bin/perl use strict; use warnings; use Bio::Seq; use Bio::SeqIO; use Bio::DB::Fasta; $| = 1; # Flush output my $outfile_cds = Bio::SeqIO->new( -for...2144 days ago
Perl subroutine to read genome/reads fasta file !
...$map{$id} = $seq; $seq=""; } ($id) = split(' ',$_); $id=~s/>//; } else { $seq=$seq.$_; } } $map{$id} = $seq; close(IN); return \%map; }...2138 days ago
- ...yPassport/rnaseq_boris/AIG_AAAOSW_8_2_C1CBGACXX.IND11_noribo_c...yPassport/rnaseq_boris/AIG_AAAOSW_8_1_C1CBGACXX.IND11_noribo_c...yPassport/rnaseq_boris/AIG_AAAOSW_8_1_C1CBGACXX.IND11_noribo_c...ico_read_normalization/AIG_AAAOSW_8_1_C1CBGACXX.IND11_noribo_c...
2132 days ago
- ...Dump only unaligned sequences --aligned-region Filter by position on genome. Name can...'accession.spot.readid' on defline --helicos Helico...
2131 days ago
- ...onds [ INFO] 2018-07-13 14:54:34 : No reads provided, skipping read diagnostics [ INFO] 2018-07-13 14:54:34 : No reference provided, skipping comparative diagnostics [ INFO] 2018-07-13 14:54...
2128 days ago
- ...oad URLs. sample_links = {"ERR458493": "https://osf.io/5daup/download", "ERR458494":"https://osf.io/8rvh5/download",...ownload", "ERR458500":"https://osf.io/xju4a/download",...
1521 days ago
Installing Porechop on Ubuntu !
...at {auto,fasta,fastq,fasta.gz,fastq.gz}] [-v VERBOSITY] [-t THRE...the format will be chosen based on the output filenam...MIN_SPLIT_READ_SIZE Post-split read pieces smaller th...2111 days ago
- ...nloading https://files.pythonhosted.org/packages/aa/53/dbdb521...CMakeFiles/zlibstatic.dir/gzclose.o [ 6%] Building C object...ign-compare] if ( WriteToSocket(requestHeader.c_str(), h...file, "%i", IPrinter::calc_pos(SV->get_coordinates().start.m...
2103 days ago
Perl script to extract sequence by Ids from multifasta file !
...(); open FILE, $idsfile; while() { chomp; $ids{$_} += 1; } close FILE; local $/ = "\n>";...~ s/\n//g; # remove endlines print ">$id\n$seq\n"; } } close FASTA;2101 days ago
Installing Busco version 4.0.6
...bioconda/linux-64::perl-params-check-0.38-pl526_1 perl-parent bioconda/linux-64::perl-parent-0.236-pl526_1 perl-perl-ostype bioconda/linux-64::perl-perl-ostype-1.010-pl526_1 perl-sca...1458 days ago
