Comment on "Running Trinity on RNA-seq !"
...l replicates make sense. If there are any confounding aspects to the data, such as outliers or batch effects, you'll want to catch them as early as possible and account for them in...2116 days ago
Comment on "Installing Perl environment on Linux"
...OK==> Found dependencies: Data::Stag, URI::Escape, IO::String, Test::Most--> Working on Data::StagF...ng URI-1.74 ... OKSuccessfully installed URI-1.74--> Working on Test::MostFetching http://www.cpan.org/...2119 days ago
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Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...nd back at the Linux command line: R CMD INSTALL poRe_0.16.tar.gz The fastq extraction scripts for poRe are in github, so let’s go get those: git clone https://github...2167 days ago
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Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Install cpanm to make installing other modules easier (you'll thank us later). You need to type these commands into a Terminal emulator (Mac OS X, Win32, Linux) cpan App::cpanminus Now install any module you can find. cpanm Module::Name2211 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...oinformaticsclub.blogspot.com BioToolshttp://bio-tools.org Flags and Lollipopshttp://www.ghastlyfop.com/blog/ Macromolecular Modeling Bloghttp://rosettadesigngroup.com/blog/ Nue...2235 days ago
Comment on "Basic command-line to run BLAST"
...protein.fa.gz []urbe@urbo214b[Human_vs_Avaga_protein] wget http://www.genoscope.cns.fr/adineta/data/Adineta_vaga.v2.pep.fa.gz--2018-03-14 10:23:14-- http://www.genoscope.cns.fr/adineta/data/Adine...2237 days ago
Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
NanoComp: comparing multiple runs NanoStat: statistic summary report of reads or alignments NanoFilt: filtering and trimming of reads NanoLyse: removing contaminant reads (e.g. lambda control DNA) from fastq2246 days ago