BOL: Results for "Occurrence"

Results for "Occurrence"

- Neelam Jha@neelam
Most Commonly used Awk by Bioinformatician
...1 in l{print $0"\t"l[$1]}' file2.txt > output.txt count number of occurrence of column 2 (uniq -c): awk '...x,l[x]}' input.txt apply "uniq" on column 2, only printing the first occurrence (uniq): awk '!($2 in l){prin...
3926 days ago
- Surabhi Chaudhary@surabhi
Commercial and public next-gen-seq (NGS) software
...ls by aligning shotgun reads to the finished genome sequence. Highly repetitive elements are filtered out by ignoring those kmer words with high occurrence numbers. More tuned for ABI S...
3532 days ago
+1 more Top-level pages

- Jit@jit.aber
Count the number of occurrence of pattern in a file using Perl. perl -e '$_ = <>; print scalar ( () = m/needle/g ), "\n"' #Perl #Perloneliner #Count #Occurrence
3630 days ago
- Jit@jit.aber
Count the number of "pattern" occurrence in a file grep -o 'pattern' anc.annots.gff | wc -l #Linux #grep #Count #Number #Occurrence
3630 days ago

- Shruti Paniwala@shruti
Paper test for cancer !!!
...our years behind the current year. In addition, the regularly updated Facts & Figures publications present the most current trends in cancer occurrence and survival, as well as info...
3735 days ago

- Rahul Nayak@rahul
Estimate Genome Size
# Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2278 days ago
- Jit@jit.aber
Perl script to count occurrence of a character !
#!/usr/bin/env perl # -*- coding: utf-8 -*- #!/usr/bin/perl use strict; use warnings; my %count_of; while ( ) { my @val = split "\t", $_; #my ( $w...
1914 days ago

- Jit@jit.aber
Comment on "Platanus"
...n INT : Initial k-mer coverage cutoff (default 0, 0 means auto) When "-n 0", the value depends on k-mer occurrence distribution. If k-mer occurrence distribution is abnormal (Ex....
2812 days ago