SIMBA: a Genome Assembly Project Management System
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to...1997 days ago
1979 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and other types of next-ge...ur documentation wiki for details on how to use the system, or check out some of the vie...1961 days ago
Osprey: Network Visualization System
...and is compatible with Windows, Linux, and Apple operating systems. These works were published...eitkreutz, BJ., Stark, C., Tyers M. "Osprey: A Network Visualization System." Genome Biology 2003 4(3):R2...1945 days ago
SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
...ampling. Existing tools only implement some of these manipulations, and not particularly efficiently, and some are only available for certain operating systems. Furthermore, the complicate...1945 days ago
ITIS: the Integrated Taxonomic Information System!
ITIS, the Integrated Taxonomic Information System! Here you will find authoritative taxonomic information on plants, animals, fungi, and microbes of North America and the world. We are a&nb...1723 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
...Project home page: http://biodatageeks.org/sequila/ • Source code repository: https://github.com/ZSI-Bio/bdg-sequila • Operating system: Platform independent •...1616 days ago
CLARK: Fast, accurate and versatile sequence classification system
CLARK, a method based on a supervised sequence classification using discriminative k-mers. Considering two distinct specific classification problems (see the artic...1554 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Dahak is a software suite that integrates state-of-the-art open source tools for metage...iver the analytical framework as a robust and reliable containerized workflow system, which will be free from depe...1500 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neur...sequencing reads against a draft assembly. It outperforms graph-based methods operat...1461 days ago