Results for "Operation Analysis"
Bio-Scripts
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under GN...ated and ready for import into a spreadsheet program for browsing and further analysis. # use strict; use warni...2927 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
Lenovo-ideapad-320-15ISK:~/Downloads/abc/bin$ sudo apt install dos2unix [sudo] password for bioqueen: Reading...0 to remove and 0 not upgraded. Need to get 351 kB of archives. After this operatio...1190 days ago
Install ATOM editor on Elemantory OS / Ubuntu
#Download ATOM deb file from https://atom.io/ https://atom.io/download/deb (base) bioqueen@bioqueen-Lenovo-ideapa...emove and 0 not upgraded. Need to get 845 kB/127 MB of archives. After this operatio...1189 days ago
Biological Sequence handling with Perl !
package Sequence::Generic; # File: Sequence/Generic.pm use strict; use Carp; use overload '""' => 'a..." unless $sequence->can('seq'); %{$self} = %{$sequence}; # clone operatio...2194 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the ref...2153 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for d...alled.................................no. auto::coverage - Are coverage analysis tools installed...Negative re...1550 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate...mbly/transrateSTAT/Trinity/contigs.csv [ INFO] 2018-07-13 14:54:40 : Writing analysis results to assemblies.csv
2136 days ago
- ...ics for the given BaseCalling analysis directory. ExtractIllum...------------------- Coverage Analysis:...ools that perform metagenomic analysis, e.g. microbial community com...iple VCF files from a scatter operation into a single VCF file...
2088 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail ---------------------...ssibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...ssibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...2047 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone https://github.com/andyrimmer/Platypus.git Cloning int...to remove and 138 not upgraded. Need to get 50,8 MB of archives. After this operatio...2032 days ago
