UCSC SARS-CoV-2 Genome Browser
The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an adaptati...des. We invite all investigators to contribute to this resource to accelerate research and development activities gl...860 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Courses Old courses (2012-...2221 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, process...ylip, FASTA, etc. Application scripts for performing some useful phylogenetic operatio...2215 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro mea...formation for de novo genome assembly via transposase contiguity. Genome Research 2014 Dec;24(12):2041-9. doi:&...2194 days ago
2193 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence r...nly. VCF input should contain diploid variants. If you use HapCUT2 in your research, please cite: Edge, P., Ba...2192 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes...colors which can be highly advantageous in the scientific interpretations and research work. The package provide mul...1861 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It i...s and the indexing data structures (2way-BWT) are developed by the algorithms research group of the Department of Co...2184 days ago
Instructions for Creating Your Own R Package
The following is a step-by-step guide to creating your own R package. Even beyond...course, youmay find this useful for storing functions you create for your own research or for editing existingR pack...1548 days ago
2079 days ago