Results for "Overlap Graph"
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Mugsy: multiple whole genome alignment tool
Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a custom graph based segmentation procedure...2336 days ago
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
While the number of sequenced diploid genomes have been steadily increasing in the las...for NGS projects. To address this limitation, we developed the first de Bruijn graph assembler, dipSPAdes, for HP...2324 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
...mblers, Ra does not have an error correction step. Instead, it relies on detecting overlaps using a very sensitive and specific overlapper ("graphmap -w owler", https://github.com/isovic/graphmap) and constructing and redu...2317 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
Ultimate tool for resolving repeats in genome...entation of the idea of the rectangle graph approach is already included...n, we're also releasing the Rectangle Graph Module (RGM) as the separate...rrent implementation of the rectangle graph approach in SPAdes, in the fu...2317 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
Jabba is a hybrid error correction tool to correct third generation (PacBio...lumina) data. Input Jabba takes as input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph should appear in fasta format...1978 days ago
RGFA: powerful and convenient handling of assembly graphs
RGFA, an implementation of the proposed GFA specification in Ruby. It allows the user...near paths can be performed. A typical application of RGFA is the editing of a graph, to finish the assembly of a...1564 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://bior...esults in the paper can be found in this repository. HINGE is an OLC(Overl...2276 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary...n families of homologous genes or proteins (elements). PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements....2247 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...ovo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not...2189 days ago
- MARVEL consists of a set of tools that facilitate the overlapping, patching, correction and as.... The assembly process can be summarized as follows: overlap patch reads overlap (again) scrubbing assembly graph construction and touring opt...
2189 days ago
