Results for "Overlap Graph"
Top-level pages
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...and is based on colored de Bruijn graphs) Software (Python) http://gi...ght and fast read mapper and read overlap detector (uses the concept of...noisy reads (SMRT, ONT) using the Overlap-Layout Consensus (OLC) appr...based on assembly using de Bruijn graphs and Bray–Curtis dissim...2370 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for h...use 4 threads max memory is 32Gb use 3 kmer values to build the de bruijn graph(s) - 31, 51 and 71 only run...
2349 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It...ead self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format....2329 days ago
List of visualization tools for network biology
Network analysis is any structured technique used...k and complex system, dynamic and hierarchical graph. https://gephi.org Igraph Collection of network analys...nd import external data http://tinyurl.com/yEdGraph/ Web tools for network analy...2287 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improv...on of results: ABySS Explorer Interactive Java application that uses a novel graph-based representation to displ...2282 days ago
Some useful Bioinformatics links
...cbrc.jp/alignment/software/tips.html Omega | Overlap-graph de novo Assembler for Metagenom...odu/Disco: Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Meta...ve mapping of nanopore sequencing reads with GraphMap | Nature Communications h...2240 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-notebook python-pandas python-sym...earrangements=False, noreduction=True, noscaffolding=True, outdir='test/run1', overl...
2189 days ago
Bioinformatics tools for genome assembly !
...er for large genomes that uses de Bruijn graphs. Velvet: Another de Bruijn graph-based assembler optimized for...enome assembly. wtdbg2: A de Bruijn graph assembler for long reads, eff...sta: A long-read assembler that uses the Overlap-Layout-Consensus approach,...285 days ago
Mitochondrial genome assembly tools !
Mitochondrial genome assembly tools are specialized software and algorithms designed t...ar mitochondrial DNA sequences (numts). IDBA-UD: IDBA-UD (Iterative De Bruijn Graph De Novo Assembler) is another...241 days ago
- « Previous
- 1
- 2
- Next »
