Results for "PA"
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Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp411 days ago
Comment on "Benchmarking Perl Module !"
...a simple and standardized way to measure and compare the performance of Perl cod...ou can install it using the following command: cpan Benchmark Write benchma...e per iteration. You can use these results to compare the performance of your Per...428 days ago
Comment on "Short-read assembly using Spades !"
...number of short sequencing reads. SPAdes (St. Petersburg genome ass...teps for short-read assembly using SPAdes: Quality control of r...rimmomatic or FastQC. Running SPAdes: After quality control, th...luation of assembly: After running SPAdes, the next step is to evalu...428 days ago
- ...able for free download. PIRS: PIRS (short for Profile-based Illumina pair-end Reads Simulator) is a s...h different sequencing technologies, including Illumina, Ion Torrent, and PacBio. PIRS allows users to cus...
428 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...ou the perl that's located within your conda environment. In this case, it should install things into your conda-directory. When you install packages via cpan it will also print the folde...429 days ago
Comment on "Short-read assembly using Spades !"
...ed from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequ...brief overview of how to use SPAdes for short-read assembly:...ws operating systems. Prepare the input data: The input d...he input files containing the paired-end reads, and <output...434 days ago
Comment on "Tools for Sequence translation !"
...an important step in the analysis of genomic and transcriptomic data. There are several tools available for sequence translation, including: ExPASy Translate Tool: This is a w...434 days ago
Comment on "Tools for Differential expression analysis"
...ression analysis, including: DESeq2: This R package is widely used for analy...r differential expression. edgeR: Another R package that is commonly used fo...fferential expression. NOISeq: This is an R package that is used for differe...434 days ago
Comment on "Tools for RNA classification"
...e model approach to identify RNA homologs. It is particularly useful for identify...(SVM) algorithm to classify RNA sequences. It is particularly useful for identify...ences. It uses a combination of HMM-based and comparative sequence analysis appro...434 days ago
Comment on "Basic command-line to run BLAST"
BLAST compares a query sequence to a database of known sequences and identifies the most s...d "words," and searching for matches to those words in the database. It then expands the matches to identify lo...434 days ago
